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Ticket #616 (closed defect: fixed)

Opened 2010-12-07T13:59:07-06:00

Last modified 2010-12-09T13:15:35-06:00

Openlab LIFF reader assumes non-sparse planes

Reported by: melissa Owned by: melissa
Priority: major Milestone: bio-formats-4.3
Component: bio-formats Severity: serious
Keywords: Cc:
Blocked By: Blocking:

Description (last modified by melissa)

It does not correctly handle cases where some planes are missing along a particular axis. In particular, if we have these planes:

 C = 0, Z = 0
 C = 1, Z = 0
 C = 1, Z = 1
 C = 1, Z = 2

the reader would detect SizeC = 2 and SizeZ = 2, when it should detect SizeC = 2 and SizeZ = 3 with blank planes inserted as appropriate.

Change History

comment:1 Changed 2010-12-07T13:59:50-06:00 by melissa

  • Description modified

comment:2 Changed 2010-12-09T13:15:35-06:00 by melissa

  • Status changed from new to closed
  • Resolution set to fixed

(In [7375]) Added more sophisticated image name parsing to OpenlabReader. Closes #615, closes #616.