NOTICE! This is a static HTML version of a legacy LOCI Software ticket.

LOCI projects are now located on GitHub. The Bio-Formats project can be found here.

Ticket #91 (closed defect: fixed)

Opened 2007-04-04T06:43:53-05:00

Last modified 2007-04-06T12:41:50-05:00

IPLabReader fails to populate OME-XML metadata store

Reported by: curtis Owned by: melissa
Priority: major Milestone:
Component: bio-formats Severity:
Keywords: Cc:
Blocked By: Blocking:

Description (last modified by curtis)

curtis@rogue:~/svn/java/loci/formats$ showinf /media/hda1/data/Blend_Final/Blend_Final.IPL -omexml
Checking file format [IPLab]
Initializing reader
        Populating metadata
        Reading tags
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1
        at loci.formats.ome.OMEXMLMetadataStore.setChannelGlobalMinMax(
        at loci.formats.FormatReader.getPixelType(
        at loci.formats.ImageReader.getPixelType(
        at loci.formats.FormatTools.testRead(
        at loci.formats.ImageReader.testRead(
        at loci.formats.ImageReader.main(

Change History

comment:1 Changed 2007-04-04T06:47:11-05:00 by curtis

  • Component changed from notebook to bio-formats
  • Description modified
  • Summary changed from Notebook fails to parse some files to IPLabReader fails to populate OME-XML metadata store

comment:2 Changed 2007-04-06T12:41:50-05:00 by melissa

  • Status changed from new to closed
  • Resolution set to fixed

Fixed in r2566. This was a bug in OMEXMLMetadataStore, not IPLabReader.