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Ticket #225 (closed task: fixed)

Opened 2007-12-12T17:05:43-06:00

Last modified 2007-12-14T13:58:54-06:00

Hyperstack option for "View stack with"

Reported by: curtis Owned by: melissa
Priority: major Milestone:
Component: plugins Severity: non-issue
Keywords: Cc:
Blocked By: Blocking:


The Bio-Formats Importer can currently display image stacks with standard ImageJ, the 4D Data Browser, Image5D or View5D. Now that ImageJ has built-in support for hyperstacks, we should add "Hyperstack" as an option too (but only if the version of ImageJ supports them, of course).

Some notes from WSR:

HyperStacks in ImageJ are always in XYCZT order. They need to be converted to XYCZT order when they are created or opened. The shuffle() method of the HyperStackConverter class does this.

Change History

comment:1 Changed 2007-12-14T11:01:42-06:00 by curtis

More notes from WSR:

This is all that is required to open a XYCZT ordered stack contained in an ImagePlus as a hyperstack:

imp.setDimensions(channels, slices, frames);
if (channels > 1) imp = new CompositeImage(imp, mode);

comment:2 Changed 2007-12-14T13:58:54-06:00 by melissa

  • Status changed from new to closed
  • Resolution set to fixed

r3478 and r3479.