⚠	NOTICE! This is a static HTML version of a legacy LOCI Software ticket. LOCI projects are now located on GitHub. The Bio-Formats project can be found here.

Ticket #238 (closed defect: fixed)

Opened 2008-02-14T09:06:56-06:00

Last modified 2008-02-20T09:44:21-06:00

Exception is thrown when multiple BioRad datasets are in the same directory

Reported by:	melissa	Owned by:	melissa
Priority:	minor	Milestone:
Component:	bio-formats	Severity:	serious
Keywords:		Cc:
Blocked By:		Blocking:

Description

If multiple BioRad PIC datasets are present in the same directory, the following exception is thrown:

Exception in thread "main" java.lang.NullPointerException
        at java.lang.String.compareTo(String.java:1168)
        at java.lang.String.compareTo(String.java:92)
        at java.util.Arrays.mergeSort(Arrays.java:1144)
        at java.util.Arrays.sort(Arrays.java:1079)
        at loci.formats.in.BioRadReader.initFile(BioRadReader.java:750)
        at loci.formats.FormatReader.setId(FormatReader.java:631)
        at loci.formats.FormatHandler.setId(FormatHandler.java:136)
        at loci.formats.ImageReader.setId(ImageReader.java:565)
        at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:229)
        at loci.formats.tools.ImageInfo.main(ImageInfo.java:624)

To reproduce, place all of the files from biorad/brian/Yun_dapi_1 in the same directory as biorad/brian/Yun_tr_1_raw02.pic, then attempt to read the lse.xml file.

Change History

comment:1 Changed 2008-02-20T09:44:21-06:00 by melissa

Status changed from new to closed
Resolution set to fixed

r3713