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Ticket #247 (closed defect: fixed)

Opened 2008-02-20T15:38:29-06:00

Last modified 2008-02-21T07:48:34-06:00

Sequential setId calls with SVSReader can throw an exception

Reported by:	curtis	Owned by:	melissa
Priority:	critical	Milestone:
Component:	bio-formats	Severity:	critical
Keywords:		Cc:
Blocked By:		Blocking:

Description

When calling setId iteratively on multiple SVS files, an IllegalArgumentException can be thrown:

curtis@monk:~$ java SequentialTest data/svs/samples/BreastCancer.svs data/svs/samples/Mammal\ Eye_001.svs 
Exception in thread "main" java.lang.IllegalArgumentException: Invalid series: 1
        at loci.formats.FormatReader.setSeries(FormatReader.java:475)
        at loci.formats.ImageReader.setSeries(ImageReader.java:386)
        at loci.formats.FileStitcher.initFile(FileStitcher.java:1004)
        at loci.formats.FileStitcher.setId(FileStitcher.java:230)
        at SequentialTest.main(SequentialTest.java:5)

See the attached sample program.

Attachments

SequentialTest.java (229 bytes) - added by curtis 2008-02-20T15:38:52-06:00.: Program for calling setId sequentially on the same format reader.

Change History

Changed 2008-02-20T15:38:52-06:00 by curtis

attachment SequentialTest.java added

Program for calling setId sequentially on the same format reader.

comment:1 Changed 2008-02-21T07:48:34-06:00 by melissa

Status changed from new to closed
Resolution set to fixed

r3719