Ticket #251 (closed defect: fixed)
Opened 2008-02-27T17:27:25-06:00
Last modified 2008-02-28T12:52:08-06:00
Bio-Rad reader sometimes looks for an incorrectly named PIC file
| Reported by: | curtis | Owned by: | melissa |
|---|---|---|---|
| Priority: | major | Milestone: | |
| Component: | bio-formats | Severity: | serious |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: |
Description
When opening a Bio-Rad PIC file via its companion lse.xml or data.raw files, some datasets look for a nonexistent PIC file:
curtis@monk:~$ showinf data/biorad/erica/2-4827_30/lse.xml
Checking file format [Bio-Rad PIC]
Initializing reader
Exception in thread "main" java.io.IOException: File not found : /Users/curtis/data/biorad/erica/2-4827_30/2-4827_30_raw01.PIC
at loci.formats.RandomAccessStream.<init>(RandomAccessStream.java:200)
at loci.formats.in.BioRadReader.initFile(BioRadReader.java:221)
at loci.formats.in.BioRadReader.initFile(BioRadReader.java:200)
at loci.formats.FormatReader.setId(FormatReader.java:633)
at loci.formats.FormatHandler.setId(FormatHandler.java:136)
at loci.formats.ImageReader.setId(ImageReader.java:563)
at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:229)
at loci.formats.tools.ImageInfo.main(ImageInfo.java:624)
For now, the workaround is to select the .pic file itself when opening the dataset.
Change History
comment:1 Changed 2008-02-28T12:52:08-06:00 by melissa
- Status changed from new to closed
- Resolution set to fixed
r3744