Ticket #29 (closed defect: fixed)
Opened 2007-03-19T10:02:37-05:00
Last modified 2007-03-19T10:43:59-05:00
Zeiss LSM/MDB bug: "No such method: mdb_open"
| Reported by: | curtis | Owned by: | melissa |
|---|---|---|---|
| Priority: | major | Milestone: | |
| Component: | bio-formats | Severity: | |
| Keywords: | visbio | Cc: | |
| Blocked By: | Blocking: |
Description (last modified by curtis)
VisBio throws an exception when attempting to open data/zeiss-lsm/josh/081806.mdb/2a.lsm:
loci.formats.ReflectException: No such method: mdb_open at loci.formats.ReflectedUniverse.exec(ReflectedUniverse.java:244) at loci.formats.in.MDBParser.parseDatabase(MDBParser.java:94) at loci.formats.in.ZeissLSMReader.initMetadata(ZeissLSMReader.java:597) at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:819) at loci.formats.in.ZeissLSMReader.initFile(ZeissLSMReader.java:160) at loci.formats.in.BaseTiffReader.getImageCount(BaseTiffReader.java:662) at loci.formats.ImageReader.getImageCount(ImageReader.java:201) at loci.visbio.data.DatasetPane.buildPage(DatasetPane.java:390) at loci.visbio.data.DatasetPane$1.run(DatasetPane.java:241) loci.formats.ReflectException: No such method: mdb_open at loci.formats.ReflectedUniverse.exec(ReflectedUniverse.java:244) at loci.formats.in.MDBParser.parseDatabase(MDBParser.java:94) at loci.formats.in.ZeissLSMReader.initMetadata(ZeissLSMReader.java:597) at loci.formats.in.ZeissLSMReader.initFile(ZeissLSMReader.java:230) at loci.formats.in.BaseTiffReader.getImageCount(BaseTiffReader.java:662) at loci.formats.ImageReader.getImageCount(ImageReader.java:201) at loci.visbio.data.DatasetPane.buildPage(DatasetPane.java:390) at loci.visbio.data.DatasetPane$1.run(DatasetPane.java:241)
I filed this bug with Bio-Formats since the exception ultimately happens within MDBParser, but it is unclear whether the problem is with Bio-Formats, VisBio, or a packaging issue.