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Ticket #329 (closed defect: fixed)

Opened 2008-11-19T12:57:27-06:00

Last modified 2008-11-26T08:05:48-06:00

Exception when saving from Image5D window

Reported by:	melissa	Owned by:	melissa
Priority:	major	Milestone:
Component:	plugins	Severity:	serious
Keywords:		Cc:
Blocked By:		Blocking:

Description

Attempting to save some Image5D stacks using the Bio-Formats Exporter plugin results in the following exception:

java.lang.IllegalArgumentException: Invalid C size: 0
  at loci.formats.FormatTools.getZCTCoords(FormatTools.java:253)
  at loci.formats.out.OMETiffWriter.close(OMETiffWriter.java:127)
  at loci.formats.out.TiffWriter.saveImage(TiffWriter.java:165)
  at loci.formats.out.TiffWriter.saveImage(TiffWriter.java:185)
  at loci.formats.out.OMETiffWriter.saveImage(OMETiffWriter.java:178)
  at loci.formats.FormatWriter.saveImage(FormatWriter.java:109)
  at loci.plugins.Exporter.run(Exporter.java:243)
  at loci.plugins.LociExporter.run(LociExporter.java:69)
  at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:243)
  at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:102)
  at ij.IJ.runUserPlugIn(IJ.java:177)
  at ij.IJ.runPlugIn(IJ.java:141)
  at ij.Executer.runCommand(Executer.java:104)
  at ij.Executer.run(Executer.java:58)
  at java.lang.Thread.run(Thread.java:619)

This can be reproduced by opening ome-tiff/curtis/multi-channel-4D-series.ome.tif.

Change History

comment:1 Changed 2008-11-24T20:18:47-06:00 by melissa

Status changed from new to closed
Resolution set to fixed

(In [4652]) Workaround for known bug in exporting from an Image5D window. Closes #329.

comment:2 Changed 2008-11-26T08:05:48-06:00 by melissa

Better fix in r4658.