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Ticket #343 (closed defect: fixed)

Opened 2008-12-31T19:21:36-06:00

Last modified 2009-01-06T13:58:22-06:00

Fix OME-XML population bugs in FV1000 reader

Reported by: melissa Owned by: melissa
Priority: critical Milestone: bio-formats-4.0
Component: bio-formats Severity: serious
Keywords: Cc: glenmac@…
Blocked By: Blocking:

Description

The following fields are being populated incorrectly:

  • LogicalChannel ID
  • possibly LogicalChannel IllumationType
  • Laser Wavelength (should correspond to LogicalChannel ExcitationWavelength)
  • possibly Laser/LightSource ID

Change History

comment:1 Changed 2009-01-06T13:58:22-06:00 by melissa

  • Status changed from new to closed
  • Resolution set to fixed

Fixed wavelengths in r4731. The Laser Wavelength value was correct, but the Wavelength value under LightSourceRef was not being populated. The difference between the two is that the Laser Wavelength is the default value, whereas the LightSourceRef Wavelength is the actual value.

Upon further inspection, the IDs and IlluminationType are correct. Note that the IlluminationType specifies the type of light used - transmitted, fluorscence, etc.