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Ticket #379 (closed defect: fixed)

Opened 2009-04-23T14:54:40-05:00

Last modified 2009-04-23T22:26:28-05:00

EOFException reading some LEI datasets

Reported by:	curtis	Owned by:	melissa
Priority:	major	Milestone:
Component:	bio-formats	Severity:	serious
Keywords:		Cc:
Blocked By:		Blocking:

Description

$ showinf data/leica/mark/mwoodbri-leica/exp1.lei 
Checking file format [Leica]
Initializing reader
        Reading metadata blocks
        Parsing metadata blocks
        Handling renamed TIFF files
        Populating metadata
Exception in thread "main" java.io.EOFException
        at java.io.RandomAccessFile.readFully(RandomAccessFile.java:373)
        at loci.common.RAFile.readFully(RAFile.java:146)
        at loci.common.RandomAccessStream.readFully(RandomAccessStream.java:398)
        at loci.common.DataTools.read2SignedBytes(DataTools.java:103)
        at loci.common.RandomAccessStream.readShort(RandomAccessStream.java:288)
        at loci.formats.in.MinimalTiffReader.initFile(MinimalTiffReader.java:148)
        at loci.formats.FormatReader.setId(FormatReader.java:327)
        at loci.formats.in.LeicaReader.initFile(LeicaReader.java:810)
        at loci.formats.FormatReader.setId(FormatReader.java:327)
        at loci.formats.ImageReader.setId(ImageReader.java:581)
        at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:261)
        at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:59)
        at loci.formats.tools.ImageInfo.main(ImageInfo.java:671)

Change History

comment:1 Changed 2009-04-23T22:26:28-05:00 by melissa

Status changed from new to closed
Resolution set to fixed

Mostly fixed in r5027. An EOFException will still be thrown when attempting to open the exp1 dataset, as all of the constituent TIFF files are empty. However, the .lei file can now be initialized without an exception being thrown.