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Ticket #380 (closed defect: fixed)

Opened 2009-04-23T14:56:44-05:00

Last modified 2009-04-28T12:18:05-05:00

Error converting some LEI files to OME-TIFF

Reported by:	curtis	Owned by:	melissa
Priority:	major	Milestone:
Component:	bio-formats	Severity:	serious
Keywords:		Cc:
Blocked By:		Blocking:

Description

$ bfconvert data/leica/simon/Leica\ demo/GFP-YFPcaax/GFP-YFPcaax.lei \
> -series 0 GFP-YFPcaax-series0.ome.tif
...
Exception in thread "main" java.lang.ArithmeticException: / by zero
        at loci.formats.out.OMETiffWriter.close(OMETiffWriter.java:105)
        at loci.formats.out.TiffWriter.saveImage(TiffWriter.java:165)
        at loci.formats.out.TiffWriter.saveImage(TiffWriter.java:186)
        at loci.formats.out.OMETiffWriter.saveImage(OMETiffWriter.java:157)
        at loci.formats.ImageWriter.saveImage(ImageWriter.java:195)
        at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:182)
        at loci.formats.tools.ImageConverter.main(ImageConverter.java:208)

Change History

comment:1 Changed 2009-04-28T12:18:05-05:00 by melissa

Status changed from new to closed
Resolution set to fixed

(In [5036]) Fix for reading/writing an OME-TIFF dataset that doesn't contain pixel data for every series. Closes #380.