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Ticket #394 (closed defect: fixed)

Opened 2009-05-11T20:01:07-05:00

Last modified 2009-06-08T12:20:53-05:00

Flex file metadata objective extraction incorrect

Reported by: gbonamy Owned by: melissa
Priority: major Milestone: bio-formats-4.1
Component: bio-formats Severity: major
Keywords: FLEX Cc:
Blocked By: Blocking:


The objective extraction is incorrect (cf. attached Flex Metadata error.jpg). The FLEX file attached was imaged using the 10X objective.

As per our discussion, the objective selected must be extracted from the image tag and then mapped back to the <objectives></objectives> tags. Similarly ca,eras, lasers, etc. should use the same concept.

Ex. <Images> <Image BufferNo="0"> <ObjectiveRef>10x_Air_UPlanSApo</ObjectiveRef> ...

Should map back to: <Objectives> <Objective ID="10xW_UPlanApo10xW3_NA=0.4"> <Magnification Type="decimal">10.0</Magnification> <NumAperture Type="decimal">0.40</NumAperture> <Immersion Type="decimal">1.33</Immersion> </Objective> ....


Flex Metadata error.jpg (125.6 KB) - added by gbonamy 2009-05-11T20:01:45-05:00.
Invalid genaration of the objective used
001001000.xml (7.5 KB) - added by gbonamy 2009-05-11T20:10:12-05:00.
XML portion of the flex file

Change History

Changed 2009-05-11T20:01:45-05:00 by gbonamy

Invalid genaration of the objective used

Changed 2009-05-11T20:10:12-05:00 by gbonamy

XML portion of the flex file

comment:1 Changed 2009-06-08T12:20:53-05:00 by melissa

  • Status changed from new to closed
  • Resolution set to fixed

(In [5155]) * Added getter/setter for Filter.ID to MetadataStore/MetadataRetrieve.

  • Lots of work on Flex metadata support. Closes #394.