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Ticket #442 (closed defect: invalid)

Opened 2009-11-25T06:26:35-06:00

Last modified 2009-11-30T07:53:06-06:00

Feedback 2117: color on change on re-import

Reported by:	omero-qa	Owned by:	melissa
Priority:	critical	Milestone:
Component:	from QA	Severity:	serious
Keywords:		Cc:	josh.moore@…
Blocked By:		Blocking:

Description

http://qa.openmicroscopy.org.uk/qa/feedback/2117/

Change History

comment:1 follow-up: ↓ 2 Changed 2009-11-25T14:01:15-06:00 by melissa

Status changed from new to closed
Resolution set to invalid

This is not a bug in Bio-Formats, but rather a problem with OMERO's OME-TIFF export. Much of the metadata that is present in MIAS datasets is lost when exporting to OME-TIFF - most importantly, all SPW information is lost. It appears as though the color settings for an Image are determined based on whether or not the file in question contains SPW data; if you manually insert '<Plane ID="Plane:0"/>' into the exported OME-TIFF, then the colors will be correct upon import.

There's really not much we can do about this in Bio-Formats; hopefully with improved codegen (and thus more complete export), this problem will disappear.

comment:2 in reply to: ↑ 1 Changed 2009-11-30T07:53:06-06:00 by melissa

Replying to melissa:

if you manually insert '<Plane ID="Plane:0"/>' into the exported OME-TIFF, then the colors will be correct upon import.

This should be '<Plate ID="Plate:0"/>'.