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Ticket #510 (closed defect: invalid)

Opened 2010-06-30T10:31:53-05:00

Last modified 2010-07-14T14:54:44-05:00

Some Amira files throw an exception during setId

Reported by:	melissa	Owned by:	melissa
Priority:	major	Milestone:	~~bio-formats-4.2.1~~
Component:	bio-formats	Severity:	minor
Keywords:		Cc:
Blocked By:		Blocking:

Description

See data/amira/jeremy/HIV_FINAL.hx and data/amira/jeremy/HIV_Virus_Membrane3.am. The relevant exception is:

Exception in thread "main" loci.formats.FormatException: Syntax Error:0:0: Doesn't seem to be an Amira file
        at loci.formats.tools.AmiraParameters.syntaxError(AmiraParameters.java:147)
        at loci.formats.tools.AmiraParameters.readFile(AmiraParameters.java:99)
        at loci.formats.tools.AmiraParameters.<init>(AmiraParameters.java:69)
        at loci.formats.in.AmiraReader.initFile(AmiraReader.java:113)
        at loci.formats.FormatReader.setId(FormatReader.java:1066)
        at loci.formats.ImageReader.setId(ImageReader.java:644)
        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:476)
        at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:883)
        at loci.formats.tools.ImageInfo.main(ImageInfo.java:912)

Change History

comment:1 Changed 2010-07-14T14:54:44-05:00 by melissa

Status changed from new to closed
Resolution set to invalid

The Amira software does not open either file, so I'm going to assume that both files are indeed invalid.