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Ticket #550 (closed defect: fixed)

Opened 2010-09-06T13:05:39-05:00

Last modified 2010-09-20T11:18:16-05:00

ScanR reader assumes that wells form a square

Reported by:	melissa	Owned by:	melissa
Priority:	major	Milestone:	~~bio-formats-4.2.1~~
Component:	bio-formats	Severity:	serious
Keywords:		Cc:	ruben.munoz@…
Blocked By:		Blocking:

Description

The number of wells acquired in each row is assumed to be either 0, or equal to the number of wells acquired in every other row. Thus, a pattern like this:

 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------
 |   |   |   |   |   |   |   |   |
 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------

is properly handled, but a pattern like this:

 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------
 |   |   |   |   | x |   |   |   |
 ---------------------------------
 | x | x | x | x | x | x | x | x |
 ---------------------------------

is not - the ScanR reader will return 4 x 8 = 32 series, with 7 of them containing all black images. It should instead return 25 series.

Change History

comment:1 Changed 2010-09-20T11:18:16-05:00 by melissa

Status changed from new to closed
Resolution set to fixed

Fixed in r6959.