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Ticket #560 (closed defect: fixed)

Opened 2010-09-14T07:47:28-05:00

Last modified 2011-02-02T04:45:00-06:00

Fix multi-line description MetaMorph ND files

Reported by:	callan	Owned by:	callan
Priority:	minor	Milestone:
Component:	bio-formats	Severity:	minor
Keywords:		Cc:
Blocked By:		Blocking:

Description

When a MetaMorph ND file has a multi-line description setId() fails with an exception:

java.lang.StringIndexOutOfBoundsException: String index out of range: -3
	at java.lang.String.substring(String.java:1937)
	at loci.formats.in.MetamorphReader.initFile(MetamorphReader.java:286)
	at loci.formats.FormatReader.setId(FormatReader.java:901)
	at loci.formats.ImageReader.setId(ImageReader.java:588)
	at com.glencoesoftware.importer.queue.UploadReactor.upload(UploadReactor.java:458)
	at com.glencoesoftware.importer.queue.UploadReactor.run(UploadReactor.java:272)

Change History

comment:1 Changed 2010-09-14T10:10:30-05:00 by callan

(In [6922]) Merging r6367 from Trunk. (See #560)

comment:2 Changed 2010-09-14T10:12:49-05:00 by callan

Status changed from new to assigned

Original solution was made in Trunk with r6367. This solution does not handle multi-line descriptions "properly" it just ignores lines without a comma separating the keys and values of the ND file. We should probably move to a regular expression based parsing approach.

comment:3 Changed 2010-09-14T10:13:23-05:00 by callan

Priority changed from major to minor
Severity changed from serious to minor

comment:4 Changed 2010-09-14T10:49:13-05:00 by callan

(In [6923]) Fixing infinite loop introduced by merging r6367 from Trunk. (See #560)

comment:5 Changed 2011-02-02T04:45:00-06:00 by curtis

Status changed from new to closed
Resolution set to fixed

moved to ome:#4153