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Ticket #612 (closed defect: fixed)

Opened 2010-12-06T08:51:58-06:00

Last modified 2011-01-14T11:50:43-06:00

Multi-channel indexed color images treated incorrectly

Reported by: melissa Owned by: melissa
Priority: major Milestone: bio-formats-4.3
Component: plugins Severity: serious
Keywords: sprint-1 Cc: selchow@…, white@…
Blocked By: Blocking:

Description (last modified by curtis)

If I open data/ome-tiff/olaf/*.ome.tiff using "Plugins > LOCI > Bio-Formats Importer" with the following options selected:

  • "View stack with" == "Hyperstack"
  • "Color mode" == "Default"
  • "Autoscale" checked

Then the number of channels is 9; 3 channels, each with their own LUT, are expected. This is because ChannelFiller is added to the reader stack and only disabled if SizeC == 1 and the 8-bit LUT is non-null.

Change History

comment:1 Changed 2010-12-20T16:14:52-06:00 by curtis

  • Description modified

We should discuss this before any changes are made to the behavior. I think what "should" happen is dependent on whether the LUTs are false color or not.

comment:2 Changed 2011-01-13T08:57:46-06:00 by melissa

  • Keywords sprint-1 added

comment:3 Changed 2011-01-14T11:50:43-06:00 by melissa

  • Status changed from new to closed
  • Resolution set to fixed

(In [7538]) Set 'falseColor' to true, so that lookup tables are not improperly expanded by the ImageJ plugin. Closes #612.