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Ticket #646 (closed defect: fixed)

Opened 2011-01-18T12:56:17-06:00

Last modified 2011-01-19T15:40:29-06:00

OME-TIFFs cannot be opened in Fiji with file grouping turned on

Reported by:	melissa	Owned by:	melissa
Priority:	major	Milestone:	~~bio-formats-4.3~~
Component:	bio-formats	Severity:	serious
Keywords:	sprint-1	Cc:
Blocked By:		Blocking:

Description

To reproduce:

start Fiji
select Plugins > LOCI > Bio-Formats Importer
select data/test_images_good/ome-tiff/4D-series.ome.tif
set "View stack with" to "Hyperstack" and check the "Group files with similar names" option
observe the following exception:

java.lang.NullPointerException
	at loci.formats.FileStitcher.getFilePattern(FileStitcher.java:192)
	at loci.plugins.in.ImportProcess.initializeStack(ImportProcess.java:493)
	at loci.plugins.in.ImportProcess.execute(ImportProcess.java:142)
	at loci.plugins.in.Importer.showDialogs(Importer.java:125)
	at loci.plugins.in.Importer.run(Importer.java:77)
	at loci.plugins.LociImporter.run(LociImporter.java:77)
	at ij.IJ.runUserPlugIn(IJ.java:193)
	at ij.IJ.runPlugIn(IJ.java:154)
	at ij.Executer.runCommand(Executer.java:147)
	at ij.Executer.run(Executer.java:78)
	at java.lang.Thread.run(Thread.java:619)

Change History

comment:1 Changed 2011-01-19T15:40:29-06:00 by melissa

Status changed from new to closed
Resolution set to fixed

(In [7553]) Prevent an NPE when attempting to stitch datasets that aren't stitchable. Closes #646.