NOTICE! This is a static HTML version of a legacy LOCI Software ticket.

LOCI projects are now located on GitHub. The Bio-Formats project can be found here.

Ticket #746 (closed defect: fixed)

Opened 2012-10-05T12:23:20-05:00

Last modified 2012-12-07T18:36:25-06:00

Batch processing

Reported by: aivar Owned by: aivar
Priority: major Milestone: slimplugin2.0
Component: slim-plugin Severity: serious
Keywords: Cc: payoung2@…
Blocked By: Blocking:

Description

SLIMPlugin should support batch processing.

The problem is the current UI interface doesn't use IJ dialogs and won't work with the macro language.

Ideally could fit a folder of images and export histogram data as text file.

Change History

comment:1 Changed 2012-12-04T16:44:44-06:00 by aivar

Added batch processing capabilities via macro. User loads a sample image, adjusts settings, prompt, etc. Once fit is satisfactory user can invoke a macro (Plugins/Macro/Run). Macro lets user choose a source directory and then pops up a dialog box with checkboxes for export pixels to text and export histograms to text as well as a text field for output file. Output file is deleted if exists then all of the .sdt or .ics files within source directory are processed. File names are logged to screen. Results in a text file of exported pixels or histograms.

comment:2 Changed 2012-12-07T18:36:25-06:00 by aivar

  • Status changed from new to closed
  • Resolution set to fixed