Ticket #814 (closed defect: fixed)
Opened 2013-06-21T15:54:12-05:00
Last modified 2013-12-12T15:20:42-06:00
won't open or create IRF
| Reported by: | payoung2 | Owned by: | aivar |
|---|---|---|---|
| Priority: | major | Milestone: | |
| Component: | slim-plugin | Severity: | serious |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: |
Description
I just did the usual stuff. Open FIJI. Click Analysis>Lifetime>Spectral lifetime analysis. I tried a few different images, and they all gave me this error....
(Fiji Is Just) ImageJ 1.47q; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 93MB of 4991MB (1%) java.lang.NoClassDefFoundError: org/scijava/nativelib/NativeLibraryUtil
at loci.curvefitter.SLIMCurveFitter.fitData(SLIMCurveFitter.java:215) at loci.slim.SLIMProcessor.fitPixel(SLIMProcessor.java:2264) at loci.slim.SLIMProcessor.fitPixel(SLIMProcessor.java:2170) at loci.slim.SLIMProcessor.access$3400(SLIMProcessor.java:139) at loci.slim.SLIMProcessor$FittingCursorListener.cursorChanged(SLIMProcessor.java:2780) at loci.slim.fitting.cursor.FittingCursor.notifyListeners(FittingCursor.java:749) at loci.slim.fitting.cursor.FittingCursor.sendNotifications(FittingCursor.java:148) at loci.slim.SLIMProcessor.updateDecayCursors(SLIMProcessor.java:1282) at loci.slim.SLIMProcessor.showGrayScaleAndFit(SLIMProcessor.java:972) at loci.slim.SLIMProcessor.doFits(SLIMProcessor.java:871) at loci.slim.SLIMProcessor.process(SLIMProcessor.java:312) at loci.slim.SLIM_PlugIn.run(SLIM_PlugIn.java:61) at ij.IJ.runUserPlugIn(IJ.java:194) at ij.IJ.runPlugIn(IJ.java:160) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at ij.Command.runPlugIn(Command.java:148) at ij.Command.runCommand(Command.java:97) at ij.Executer.run(Executer.java:64) at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.ClassNotFoundException: org.scijava.nativelib.NativeLibraryUtil
at java.net.URLClassLoader$1.run(URLClassLoader.java:202) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:190) at java.lang.ClassLoader.loadClass(ClassLoader.java:307) at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:266) at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:217) at fiji.FijiClassLoader.loadClass(FijiClassLoader.java:212) ... 22 more
Then I tried to load an IRF, and it wouldn't let me. Then I tried to use current XY, and it didn't like that either.
Thanks, Pam
Change History
comment:2 Changed 2013-12-06T15:03:05-06:00 by aivar
- Status changed from new to closed
- Resolution set to fixed
The native library loader jar name & API changed in Fiji without corresponding changes in SLIM Plugin.
comment:3 Changed 2013-12-12T15:20:42-06:00 by curtis
You're referring to the native-lib-loader dependency of curve-fitter? You fixed it over a year ago in f0d695b3. Then I updated it to use the 2.0.0 release version in f5ac69b4. So this was really more an issue of the correct JARs not being uploaded to the ImageJ update site(s), isn't it?
Anyway, as long as all works now, no worries.