Ticket #68 (closed task: fixed)
Opened 2007-03-20T14:49:45-05:00
Last modified 2009-03-11T16:52:39-05:00
Test all format readers with omebf
| Reported by: | curtis | Owned by: | melissa |
|---|---|---|---|
| Priority: | critical | Milestone: | |
| Component: | bio-formats | Severity: | fatal |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: |
Description
The omebf tool allows Bio-Formats to be used with an OME installation to import all supported formats into OME on the server side. However, it is critical that the OME-XML Bio-Formats produces is well-formed and correct, or else the import will fail. By testing omebf with all of our sample data, and fixing any bugs we find in the OME-XML generation, we will be improving both the OME server-side import mechanism itself, as well as the OME-XML conversion in general.
Change History
comment:1 Changed 2008-03-17T13:58:05-05:00 by melissa
- Severity set to fatal
comment:3 Changed 2008-03-24T07:34:23-05:00 by melissa
- Status changed from new to closed
- Resolution set to fixed
comment:4 Changed 2009-03-11T16:52:39-05:00 by curtis
- Milestone bio-formats-m1 deleted
Milestone bio-formats-m1 deleted
melissa@zu:~/data/specs/iplab$ ome import -i 'OME::ImportEngine::BioFormats' Actin.IPL Importing files 1/4: [IN PROGRESS] Starting import 3/4: [IN PROGRESS] Importing Deleting Actin.IPL 4/4: [FINISHED] Imported 0 images from 0 files. 1 scanned. 1 unknown format, 0 duplicates, 0 errors. Exiting... 4/4: [FINISHED] Imported 0 images from 0 files. 1 scanned. 1 unknown format, 0 duplicates, 0 errors. Exiting...Similar messages are produced for each format that is supported only by Bio-Formats.